Summary

SCGE ID10000000210
Lab IDSTS96 (PCSK9a; Sp_t2:Sp_c20_PCSK9a)
Sourcein house production
Target LocusPcsk9
Speciesmouse
DescriptionTargets endogenous mouse locus
Guide CompatibilitySpyCas9
Target SequenceGGCTGATGAGGCCGCACATG
Target Sequence + PAMGGCTGATGAGGCCGCACATGTGG
PositionGRCm39/mm39/chr4:106299531-106321522
Full Guide Sequence

Sp_t2: AGCAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUU

Sp_c20_PCSK9a: GGCUGAUGAGGCCGCACAUGGUUUUAGAGCUAUGCU

Spacer SequenceGGCUGAUGAGGCCGCACAUG
Spacer Length20
Modifications

Sp_t2: (mA)#(mG)#(mC)#(mA)(mU)(mA)(mG)(mC)(mA)(mA)(mG)(rU)(rU)(mA)(rA)(mA)(mA)(rU)(mA)(mA)(mG)(mG)(rC)(rU)(mA)(rG)(rU)(rC)(mC)(rG)(rU)(rU)(mA)(mU)(mC)(mA)(mA)(mC)(mU)(mU)(mG)(mA)(mA)(mA)(mA)(mA)(mG)(mU)(mG)(mG)(mC)(mA)(mC)(mC)(mG)(mA)(mG)(mU)(mC)(mG)(mG)(mU)(mG)(mC)#(mU)#(mU)#(mU)

Sp_c20_PCSK9a: (mG)#(mG)#(mC)#(mU)(mG)(mA)(mU)(mG)(mA)(mG)(fG)(fC)(fC)(fG)(rC)#(rA)#(fC)(fA)(rU)#(mG)(mG)(rU)#(rU)#(rU)#(fU)(fA)(mG)(mA)(mG)(mC)(mU)(mA)(mU)#(mG)#(mC)#(mU)

Repeat SequenceGUUUUAGAGCUAUGCU
Anit-Repeat SequenceAGCAUAGCAAGUUAAAAU
Stemloop 1 SequenceAAGGCUAGUCCGU
Stemloop 2 SequenceAACUUGAAAAAGUG
Stemloop 3 SequenceGCACCGAGUCGGUGC

Related Editors

  • SpyCas9-3xNLS

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    Projects & Experiments

    This Guide: STS96 (PCSK9a; Sp_t2:Sp_c20_PCSK9a) is being used ...
    Project Initiative Contact PI
    Delivery Systems Erik J Sontheimer, PhD
    (University of Massachusetts Medical School, Worcester)    		 NIH Report