PDCD1_site_08 | SCGE Toolkit

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SCGE ID	10000000171
Lab ID	PDCD1_site_08
Source	lab IVT
Target Locus	PDCD1
Species	human
Description	Targets endogenous human locus
Guide Compatibility	SpyCas9

Target Sequence	GAGCAGGGCTGGGGAGAAGG
Target Sequence + PAM	GAGCAGGGCTGGGGAGAAGGNGG
Position	hg38/chr2:241852930-241852953

Spacer Sequence	GAGCAGGGCUGGGGAGAAGG
Spacer Length	20
Modifications	none

Forward Primer	CGGCCAGCTTGTCCGTCTGGTTG
Reverse Primer	CTTGCTGCCCGAGGGATGTGAGC

Ivt Construct Source	Addgene
Vector Id	153997
Vector Name	pCRL01
Vector Description	Plasmid for single guide RNA IVT
Vector Type	plasmid
Annotated Map	addgene-plasmid-153997-sequence-304516

Detection Method	No. of sites detected
Change-seq	13499
Guide-seq	544

Specificity Ratio	0.003

Publication Title
CHANGE-seq reveals genetic and epigenetic effects on CRISPR-Cas9 genome-wide activity. NCBI

This Guide: PDCD1_site_08 is being used ...

Project	Initiative	Contact PI
A Novel Human T-Cell Platform to Define Biological Effects of Genome Editing Experiments A novel human T cell platform to define biological adverse effects of genome editing	Biological Effects	Shengdar Q Tsai, PhD (St. Jude Children's Research Hospital)