PTPN2_site_01 | SCGE Toolkit

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SCGE ID	10000000180
Lab ID	PTPN2_site_01
Source	lab IVT
Target Locus	PTPN2
Species	human
Description	Targets endogenous human locus
Guide Compatibility	SpyCas9

Target Sequence	GGAAACTTGGCCACTCTATG
Target Sequence + PAM	GGAAACTTGGCCACTCTATGNGG
Position	hg38/chr18:12859204-12859227

Spacer Sequence	GGAAACUUGGCCACUCUAUG
Spacer Length	20
Modifications	none

Forward Primer	TCAACACTGACCCCAAGCCCTCCT
Reverse Primer	ACGCTGGCTGGGAAGATAAGTTTTGC

Ivt Construct Source	Addgene
Vector Id	153997
Vector Name	pCRL01
Vector Description	Plasmid for single guide RNA IVT
Vector Type	plasmid
Annotated Map	addgene-plasmid-153997-sequence-304516

Detection Method	No. of sites detected
Change-seq	278
Guide-seq	3

Specificity Ratio	0.1

Publication Title
CHANGE-seq reveals genetic and epigenetic effects on CRISPR-Cas9 genome-wide activity. NCBI

This Guide: PTPN2_site_01 is being used ...

Project	Initiative	Contact PI
A Novel Human T-Cell Platform to Define Biological Effects of Genome Editing Experiments A novel human T cell platform to define biological adverse effects of genome editing	Biological Effects	Shengdar Q Tsai, PhD (St. Jude Children's Research Hospital)