PTPN2_site_02 | SCGE Toolkit

SCGE Consortium Home | About SCGE Toolkit | Contact Us | Citing the Toolkit | License

Summary Sequence Viewer Related Editors Vector Off Targets Projects & Experiments

SCGE ID	10000000181
Lab ID	PTPN2_site_02
Source	lab IVT
Target Locus	PTPN2
Species	human
Description	Targets endogenous human locus
Guide Compatibility	SpyCas9

Target Sequence	GGCACCAACTGGATGGATCA
Target Sequence + PAM	GGCACCAACTGGATGGATCANGG
Position	hg38/chr18:12840742-12840765

Spacer Sequence	GGCACCAACUGGAUGGAUCA
Spacer Length	20
Modifications	none

Forward Primer	ACCTCTCTCAGTCCTCACAGCCCT
Reverse Primer	CACCTGAGTGGAGAGCAACGTGA

Ivt Construct Source	Addgene
Vector Id	153997
Vector Name	pCRL01
Vector Description	Plasmid for single guide RNA IVT
Vector Type	plasmid
Annotated Map	addgene-plasmid-153997-sequence-304516

Detection Method	No. of sites detected
Change-seq	374

Specificity Ratio	0.076

Publication Title
CHANGE-seq reveals genetic and epigenetic effects on CRISPR-Cas9 genome-wide activity. NCBI

This Guide: PTPN2_site_02 is being used ...

Project	Initiative	Contact PI
A Novel Human T-Cell Platform to Define Biological Effects of Genome Editing Experiments A novel human T cell platform to define biological adverse effects of genome editing	Biological Effects	Shengdar Q Tsai, PhD (St. Jude Children's Research Hospital)