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ExperimentSelection of gRNA sequences and gRNA scaffold modification lead to improved editing of the Ai9 locus in vitro
Experiment ConditionL2+R2, modified scaffold
Assay Description: Editing efficiency was assessed by flow cytometry for tdTomato expression in Ai9 mouse embryonic fibroblasts after transfection with a mixture of plasmids expressing SaCas9 and the indicated U6-gRNAs
Tissue Measured:
Measurement Type:Editing Efficiency
Record ID15000000574

EditorSaCas9
Delivery System
Delivery System Subtype
GuideR2-modified; L2-modified
VectorAAV-CMV-SaCas9-U6-modified scaffold-Sa-L2; AAV-CMV-SaCas9-U6-modified scaffold-Sa-R2;

Model SpeciesMouse
Model NameAi9 Immortalized Fibroblasts

Application Methodtransient transfection
Application Site
Dosage
Injection Frequency
Injection Rate
Injection Volume
Days post injection
Editor Formatplasmid
Antidote Id
Antidote Description

Measured Values
Samples Size: 3
 
Replicate Result (Editing Efficiency)
Measurement Units: % tdTomato+ cells
Mean 10.13 
1 16.49 
2 4.27 
3 9.62 
  

Title Description File Download SCGE ID
Deverman_AAV Production and Administration Protocol Published procedures for AAV production, delivery, and tissue imaging. Challis et al. Systemic AAV vectors for widespread and targeted gene delivery in rodents. Nat Protoc. 2019 Feb;14(2):379-414. doi: 10.1038/s41596-018-0097-3. Deverman_AAV_production_and_administration_Nat Protocols-Challis_et_al_2019.pdf 21000000010
Deverman_Comprehensive Methods Procedure for plasmid cloning, editing evaluation in fibroblast, AAV production and administration, tissue processing and IHC. Deverman_Comprehensive_methods.pdf 21000000012
Deverman_Area Based Quantification of Editing Efficiency Protocol Procedure for non-IHC based image quantification of editing. Deverman_Area_based_quantification_of_editing_efficiency.pdf 21000000011