Validation Experiment: Independent validation of Chaikof delivery platform using virus-like particle (VLP) delivery to the mouse liver
PI: Jason D Heaney, PhD
Description: Virus-like particles carrying a CRISPR/Cas base editor and a guide RNA targeting the PSCK9 locus were injected i.v. into male and female mice. One week after injection, the mice were dissected, and genomic DNA isolated from a panel of organs. Targeted NGS was performed to evaluate the degree of editing at the PCSK9 locus in the liver (primary target), and non-target organs. Two potential off-target editing sites (OT6 and OT7) were also sequenced.
Editing Assay:
Targeted next generation sequencing (NGS)
Parent Project: BCM-Rice Resource for the Analysis of Somatic Gene Editing in Mice - Chaikof Validation (Chaikof, Elliot L. )
Download: Submitted files
Original Experiment/s that are being validated:
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Results |
Editing Efficiency | ||||||||||||
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Condition | Qualifier | Tissue | Sex | Editor | Model | Delivery | Target Locus | Guide | Dosage | Injection Frequency | % of reads | Image |
Male (Control) | PCSK9 | liver (TARGET) | Male | B6 | ||||||||
Male (Control) | PCSK9 | heart | Male | B6 | ||||||||
Male (Control) | PCSK9 | lung | Male | B6 | ||||||||
Male (Control) | PCSK9 | spleen | Male | B6 | ||||||||
Male (Control) | PCSK9 | kidney | Male | B6 | ||||||||
Male (Control) | PCSK9 | testis | Male | B6 | ||||||||
Male (Control) | OT6 | liver (TARGET) | Male | B6 | ||||||||
Male (Control) | OT6 | heart | Male | B6 | ||||||||
Male (Control) | OT6 | lung | Male | B6 | ||||||||
Male (Control) | OT6 | spleen | Male | B6 | ||||||||
Male (Control) | OT6 | kidney | Male | B6 | ||||||||
Male (Control) | OT6 | testis | Male | B6 | ||||||||
Male (Control) | OT7 | liver (TARGET) | Male | B6 | ||||||||
Male (Control) | OT7 | heart | Male | B6 | ||||||||
Male (Control) | OT7 | lung | Male | B6 | ||||||||
Male (Control) | OT7 | spleen | Male | B6 | ||||||||
Male (Control) | OT7 | kidney | Male | B6 | ||||||||
Male (Control) | OT7 | testis | Male | B6 | ||||||||
Female (Control) | PCSK9 | liver (TARGET) | Female | B6 | ||||||||
Female (Control) | PCSK9 | heart | Female | B6 | ||||||||
Female (Control) | PCSK9 | lung | Female | B6 | ||||||||
Female (Control) | PCSK9 | spleen | Female | B6 | ||||||||
Female (Control) | PCSK9 | kidney | Female | B6 | ||||||||
Female (Control) | PCSK9 | ovary | Female | B6 | ||||||||
Female (Control) | OT6 | liver (TARGET) | Female | B6 | ||||||||
Female (Control) | OT6 | heart | Female | B6 | ||||||||
Female (Control) | OT6 | lung | Female | B6 | ||||||||
Female (Control) | OT6 | spleen | Female | B6 | ||||||||
Female (Control) | OT6 | kidney | Female | B6 | ||||||||
Female (Control) | OT6 | ovary | Female | B6 | ||||||||
Female (Control) | OT7 | liver (TARGET) | Female | B6 | ||||||||
Female (Control) | OT7 | heart | Female | B6 | ||||||||
Female (Control) | OT7 | lung | Female | B6 | ||||||||
Female (Control) | OT7 | spleen | Female | B6 | ||||||||
Female (Control) | OT7 | kidney | Female | B6 | ||||||||
Female (Control) | OT7 | ovary | Female | B6 | ||||||||
Male (Experimental) | PCSK9 | liver (TARGET) | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | PCSK9 | heart | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | PCSK9 | lung | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | PCSK9 | spleen | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | PCSK9 | kidney | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | PCSK9 | testis | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT6 | liver (TARGET) | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT6 | heart | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT6 | lung | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT6 | spleen | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT6 | kidney | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT6 | testis | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT7 | liver (TARGET) | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT7 | heart | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT7 | lung | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT7 | spleen | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT7 | kidney | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Male (Experimental) | OT7 | testis | Male | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | PCSK9 | liver (TARGET) | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | PCSK9 | heart | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | PCSK9 | lung | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | PCSK9 | spleen | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | PCSK9 | kidney | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | PCSK9 | ovary | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT6 | liver (TARGET) | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT6 | heart | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT6 | lung | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT6 | spleen | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT6 | kidney | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT6 | ovary | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT7 | liver (TARGET) | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT7 | heart | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT7 | lung | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT7 | spleen | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT7 | kidney | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once | ||
Female (Experimental) | OT7 | ovary | Female | ABE8e | B6 | eVLP | Pcsk9 Exon 1 splice domain | Pcsk9 Exon 1 splice domain | 5E11 particles | once |