Experiment: Amphiphilic Peptides Deliver Base Editor RNPs to Rhesus Monkey Airway
PI: Paul B McCray, Jr, MD Alice F Tarantal, PhD David Guay, PhD David R Liu, PhD
Description: We utilized novel amphiphilic shuttle peptides to deliver base editor ribonucleoprotein (RNP) into the airways to edit airway epithelial cells (CCR5 locus) of rhesus monkeys. The Cas9-ABE8e RNP and shuttle peptides S10 or FSD315 were aerosolized into the rhesus monkey trachea. Seven days later, tissues were obtained and dissected, and airway epithelia collected from the trachea, mainstem, and segmental bronchi using cytology brushes. DNA was extracted from epithelial cells and subjected to high-throughput sequencing. Using the FSD315 shuttle peptide and Cas9-ABE8e, we achieved a mean editing efficiency of 2.8% at the CCR5 locus in airway epithelial cells (range 0.02 – 5.3%) depending on the anatomic region sampled. To visualize the biodistribution of the RNPs within the respiratory tract and in specific cell types, we delivered a Cy5-fluorescent peptide fused to a nuclear localization signal (NLS-Cy5) using the S10 peptide. The lungs were obtained 1 and 2 hours post-delivery, fixed, and examined by microscopy. Epifluorescence and confocal microscopy documented an effective intra-nuclear delivery of NLS-Cy5 into epithelial cells throughout the respiratory tract, including large, medium, and small airways, and alveolar regions. Ongoing analyses will identify the NLS-Cy5-positive epithelial cell types using co-localization with fluorescently-labeled antibodies. In summary, using a rhesus monkey model, following a single delivery of adenine base editor RNPs to the airways in a clinically relevant manner we achieved up to 5.3% editing efficiency of the CCR5 locus in airway epithelia, a level considered therapeutically relevant in cystic fibrosis.
Delivery Assays:
- Control Rhesus monkey - Cy5 without a peptide: Lack of delivery in the absence of the shuttle peptide was examined as the absence of Cy5 positive nuclei in the airway epithelial cells of various regions of the lungs.
- Rhesus treated with Cy5+S10 peptide. Delivery efficiency was evaluated qualitatively, and determined by the presence of Cy5 positive nuclei in the airway epithelial cells in the various regions of the lungs.
Editing Assay:
Editing efficiency was assessed using Next Generation Sequencing of airway epithelial cells obtained by airway brushing in two airways of the airway tree
Parent Project: Base Editing in Rhesus Airway Epithelial
-
Other experiments in this project: 6
- Delivery of Cas9 RNP using Shuttle peptide candidates to human airway epithelial cells cultured at the air liquid interface targeting CFTR locus
- Rhesus macaque CCR5 gRNA screening using ABE8e-Cas9
- Inhibitory effect of Cas9 RNP alone on S10- or FSDS315-mediated GFP protein delivery to HeLa cells
- Rhesus macaque CCR5 gRNA screening using ABE8e-Cas12a
- Delivery of ABE8e-Cas9 RNP using Shuttle peptide candidates to human airway epithelial cells cultured at the air liquid interface targeting B2M locus
- Delivery of ABE8e-Cas9 RNP using Shuttle peptide candidates to rhesus monkey airway epithelial cells cultured at the air liquid interface targeting CCR5 locus.
Download: Submitted files
Select experimental variable to highlight records on the chart:
Note: Hover over the bars to view additional information
Results |
Editing Efficiency | Delivery Efficiency | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Condition | Tissue | Cell Type | Sex | Editor | Model | Delivery | Target Locus | Guide | Dosage | Injection Frequency | % of A•T basepairs converted to G•C | Signal | Image |
S10 and ABE8e-Cas9 RNP | trachea | tracheal epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | left main bronchus | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | lobar bronchus of left lung upper lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | lingula of left lung | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | lobar bronchus of left lung lower lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | left lung lower lobe bronchiole | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | right main bronchus | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | lobar bronchus of right lung cranial lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | lobar bronchus of right lung middle lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
S10 and ABE8e-Cas9 RNP | lobar bronchus of right lung caudal lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | S10 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM S10 amphiphilic peptide | once | |||
ABE8e-Cas9 RNP | trachea | tracheal epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | left main bronchus | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | lobar bronchus of left lung upper lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | lingula of left lung | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | lobar bronchus of left lung lower lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | left lung lower lobe bronchiole | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | right main bronchus | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | lobar bronchus of right lung cranial lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | lobar bronchus of right lung middle lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
ABE8e-Cas9 RNP | lobar bronchus of right lung caudal lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9 | once | ||||
FSD315 and ABE8e-Cas9 RNP (animal 1) | trachea | tracheal epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | left main bronchus | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | lobar bronchus of left lung upper lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | lingula of left lung | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | lobar bronchus of left lung lower lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | left lung lower lobe bronchiole | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | right main bronchus | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | lobar bronchus of right lung cranial lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | lobar bronchus of right lung middle lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 1) | lobar bronchus of right lung caudal lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | trachea | tracheal epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | left main bronchus | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | lobar bronchus of left lung upper lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | lingula of left lung | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | lobar bronchus of left lung lower lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | left lung lower lobe bronchiole | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | right main bronchus | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | lobar bronchus of right lung cranial lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | lobar bronchus of right lung middle lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
FSD315 and ABE8e-Cas9 RNP (animal 2) | lobar bronchus of right lung caudal lobe | bronchial epithelial cell | Female | ABE8e-Cas9 | Macaca mulatta (Rhesus Macaque) | FSD315 | CCR5 | gRNA #8 | 2 uM gRNA, 2.5 uM Cas9, 40 uM FSD315 amphiphilic peptide | once | |||
S10 and DRI-NLS-Cy5 (10 uM) | trachea | tracheal epithelial cell | Male | Macaca mulatta (Rhesus Macaque) | S10 | 10 uM DRI-NLS-Cy5, 40 uM S10 amphiphilic peptide | once | ||||||
S10 and DRI-NLS-Cy5 (10 uM) | lobar bronchus of left lung lower lobe | bronchial epithelial cell | Male | Macaca mulatta (Rhesus Macaque) | S10 | 10 uM DRI-NLS-Cy5, 40 uM S10 amphiphilic peptide | once | ||||||
S10 and DRI-NLS-Cy5 (10 uM) | lower respiratory tract epithelium | ciliated epithelial cell | Male | Macaca mulatta (Rhesus Macaque) | S10 | 10 uM DRI-NLS-Cy5, 40 uM S10 amphiphilic peptide | once | ||||||
S10 and DRI-NLS-Cy5 (10 uM) | lower respiratory tract epithelium | lung secretory cell | Male | Macaca mulatta (Rhesus Macaque) | S10 | 10 uM DRI-NLS-Cy5, 40 uM S10 amphiphilic peptide | once | ||||||
S10 and DRI-NLS-Cy5 (10 uM) | lower respiratory tract epithelium | type II pneumocyte | Male | Macaca mulatta (Rhesus Macaque) | S10 | 10 uM DRI-NLS-Cy5, 40 uM S10 amphiphilic peptide | once | ||||||
S10 and DRI-NLS-Cy5 (10 uM) | lower respiratory tract epithelium | basal epithelial cell of tracheobronchial tree | Male | Macaca mulatta (Rhesus Macaque) | S10 | 10 uM DRI-NLS-Cy5, 40 uM S10 amphiphilic peptide | once | ||||||
DRI-NLS-Cy5 (10 uM) | trachea | tracheal epithelial cell | Male | Macaca mulatta (Rhesus Macaque) | 10 uM DRI-NLS-Cy5 | once | |||||||
DRI-NLS-Cy5 (10 uM) | lobar bronchus of left lung lower lobe | bronchial epithelial cell | Male | Macaca mulatta (Rhesus Macaque) | 10 uM DRI-NLS-Cy5 | once | |||||||
DRI-NLS-Cy5 (10 uM) | lower respiratory tract epithelium | ciliated epithelial cell | Male | Macaca mulatta (Rhesus Macaque) | 10 uM DRI-NLS-Cy5 | once | |||||||
DRI-NLS-Cy5 (10 uM) | lower respiratory tract epithelium | lung secretory cell | Male | Macaca mulatta (Rhesus Macaque) | 10 uM DRI-NLS-Cy5 | once | |||||||
DRI-NLS-Cy5 (10 uM) | lower respiratory tract epithelium | type II pneumocyte | Male | Macaca mulatta (Rhesus Macaque) | 10 uM DRI-NLS-Cy5 | once | |||||||
DRI-NLS-Cy5 (10 uM) | lower respiratory tract epithelium | basal epithelial cell of tracheobronchial tree | Male | Macaca mulatta (Rhesus Macaque) | 10 uM DRI-NLS-Cy5 | once |